A full list of publications is available at
Google Scholar
Year | Authors | Title | Journal/Book/Conference | Link |
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2023 | MFA Chaudhary, EA Hoffman, J Guo, AP Comellas, JD Newell, P Nagpal, S Fortis, GE Christensen et al. | Predicting severe chronic obstructive pulmonary disease exacerbations using quantitative CT: A retrospective model development and external validation study | The Lancet Digital Health | DOI |
2023 | EM Wallat, AE Wuschner, MJ Flakus, SE Gerard, GE Christensen, JM Reinhardt, and JE Bayouth | Predicting pulmonary ventilation damage after radiation therapy for non‐dmall cell lung cancer using a ResNet generative adversarial network | Medical Physics | DOI |
2023 | SE Gerard, MFA Chaudhary, J Herrmann, GE Christensen, R San José Estépar, JM Reinhardt, and EA Hoffman | Direct estimation of regional lung volume change from paired and single CT images using residual regression neural network | Medical Physics | DOI |
2022 | L Ball, C Robba, J Herrmann, SE Gerard, Y Xin, M Pigati, A Berardino, F Iannuzzi et al. | Early versus late intubation in COVID-19 patients failing helmet CPAP: A quantitative computed tomography study | Respiratory Physiology & Neurobiology | DOI |
2022 | Z Yuan, J Herrmann, S Murthy, K Peters, SE Gerard, HT Nia, KR Lutchen, and B Suki | A personalized spring network representation of emphysematous lungs from CT images | Frontiers in Network Physiology | DOI |
2022 | AE Wuschner, MJ Flakus, EM Wallat, JM Reinhardt, D Shanmuganayagam, GE Christensen, SE Gerard, and JE Bayouth | CT-derived vessel segmentation for analysis of post-radiation therapy changes in vasculature and perfusion | Frontiers in Physiology | DOI |
2022 | Y Pan, D Wang, MFA Chaudhary, W Shao, SE Gerard, OC Durumeric, SP Bhatt, RG Barr et al. | Robust measures of image-registration-derived lung biomechanics in SPIROMICS | Journal of Imaging | DOI |
2022 | M Connell, Y Xin, SE Gerard, J Herrmann, PK Shah, KT Martin, E Rezoagli, D Ippolito et al. | Unsupervised segmentation and auantification of COVID-19 lesions on computed tomography scans using CycleGAN | Methods | DOI |
2022 | EA Hermann, A Motahari, EA Hoffman, N Allen, AG Bertoni, DA Bluemke, A Eskandari, SE Gerard et al. | Pulmonary blood volume among older adults in the community: The MESA lung study | Circulation: Cardiovascular Imaging | DOI |
2022 | E Hermann, A Motahari, E Hoffman, N Allen, E Angelini, A Bertoni, D Bluemke, A Eskandari et al. | Quantitative CT emphysema subtypes and pulmonary blood volume on dual-energy CT: The MESA Lung Study | 06.03 - Tobacco, smoking control and health education | DOI |
2022 | MFA Chaudhary, SE Gerard, D Wang, GE Christensen, CB Cooper, JD Schroeder, EA Hoffman, and JM Reinhardt | Single volume lung biomechanics from chest computed tomography using a mode preserving generative adversarial network | 2022 IEEE 19th International Symposium on Biomedical Imaging (ISBI) | DOI |
2021 | Y Xin, K Martin, CCA Morais, P Delvecchio, SE Gerard, H Hamedani, J Herrmann, N Abate et al. | Diminishing efficacy of prone positioning with late application in evolving lung injury | Critical Care Medicine | DOI |
2021 | J Herrmann, SE Gerard, JM Reinhardt, EA Hoffman, and DW Kaczka | Regional gas transport during conventional and oscillatory ventilation assessed by xenon-enhanced computed tomography | Annals of Biomedical Engineering | DOI |
2021 | L Ball, C Robba, L Maiello, J Herrmann, SE Gerard, Y Xin, D Battaglini, I Brunetti et al. | Computed tomography assessment of PEEP-induced alveolar recruitment in patients with severe COVID-19 pneumonia | Critical Care | DOI |
2021 | SE Gerard, J Herrmann, Y Xin, KT Martin, E Rezoagli, D Ippolito, G Bellani, M Cereda et al. | CT image segmentation for inflamed and fibrotic lungs using a multi-resolution convolutional neural network | Scientific Reports | DOI |
2021 | D Battaglini, S Caiffa, G Gasti, E Ciaravolo, C Robba, J Herrmann, SE Gerard, M Bassetti et al. | An experimental pre-post study on the efficacy of respiratory physiotherapy in severe critically iII COVID-19 patients | Journal of Clinical Medicine | DOI |
2021 | L Ball, C Robba, J Herrmann, SE Gerard, Y Xin, M Mandelli, D Battaglini, I Brunetti et al. | Lung distribution of gas and blood volume in critically ill COVID-19 patients: A quantitative dual-energy computed tomography study | Critical Care | DOI |
2021 | J Herrmann, SE Gerard, W Shao, Y Xin, M Cereda, JM Reinhardt, GE Christensen, EA Hoffman et al. | Effects of lung injury on regional aeration and expiratory time constants: Insights from four-dimensional computed tomography image registration | Frontiers in Physiology | DOI |
2021 | P Nagpal, A Motahari, SE Gerard, J Guo, JM Reinhardt, AP Comellas, EA Hoffman, and DW Kaczka | Case studies in physiology: Temporal variations of the lung parenchyma and vasculature in asymptomatic COVID-19 pneumonia: A multispectral CT assessment | Journal of Applied Physiology | DOI |
2021 | X He, J Guo, X Zhang, H Bi, S Gerard, D Kaczka, A Motahari, E Hoffman et al. | Recursive refinement network for deformable lung registration between exhale and inhale CT scans | DOI | |
2021 | MFA Chaudhary, SE Gerard, D Wang, GE Christensen, CB Cooper, JD Schroeder, EA Hoffman, and JM Reinhardt | Single volume lung biomechanics from chest computed tomography using a mode preserving generative adversarial network | DOI | |
2021 | Y Xin, J Herrmann, K Martin, S Gerard, P Delvecchio, S Humayun, A Lenart, U Sidhu et al. | Prone ventilation in lung injury: The declining benefits of vertical axis ventilation and perfusion matching at late stages of injury | American Thoracic Society | DOI |
2021 | E Hermann, G Hiura, E Hoffman, A Motahari, S Gerard, P Nagpal, A Eskandari, J Go et al. | Pulmonary blood volume in older adults assessed by dual-energy computed tomography: The multi-ethnic study of atherosclerosis (MESA) lung study | American Thoracic Society | DOI |
2021 | K Martin, Y Xin, J Herrmann, S Gerard, P Delvecchio, S Humayun, A Lenart, U Sidhu et al. | Diminished redistribution of aeration and perfusion with prone ventilation in late stage experimental lung injury | American Thoracic Society | DOI |
2021 | M Chaudhary, E Hoffman, A Comellas, J Guo, S Fortis, S Bodduluri, F Abtin, R Barr et al. | CT texture features predict severe COPD exacerbations in SPIROMICS | American Thoracic Society | DOI |
2021 | Y Xin, A Lenart, K Martin, P Delvecchio, S Gerard, H Hamedani, J Herrmann, S Humayun et al. | High-resolution responses to prone positioning and PEEP therapy in a large animal model of evolving lung injury | American Thoracic Society | DOI |
2021 | P Silva, F Cruz, L Ball, J Herrmann, S Gerard, Y Xin, P Pelosi, and P Rocco | Time course of chest computed tomography findings and biomarkers in COVID-19 pneumonia patients | American Thoracic Society | DOI |
2021 | Y Xin, J Herrmann, S Gerard, P Delvecchio, K Martin, R Rizi, D Kaczka, and M Cereda | Non-linear inflation dynamics increase during progression of experimental lung injury | American Thoracic Society | DOI |
2021 | M Connell, Y Xin, S Gerard, J Herrmann, P Shah, K Martin, E Rezoagli, D Ippolito et al. | Unsupervised segmentation and quantification of COVID-19 lesions on computed tomography scans using CycleGAN | American Thoracic Society | DOI |
2021 | A Eskandari, P Nagpal, J Guo, A Motahari, S Gerard, D Kaczka, E Hermann, G Hiura et al. | Quality control for quantitation of regional pulmonary perfused blood volume via dual-energy CT scanning in a large multi-center cohort: The MESA lung study | American Thoracic Society | DOI |
2021 | P Delvecchio, Y Xin, K Martin, S Gerard, H Hamedani, J Herrmann, S Humayun, A Lenart et al. | A clinically relevant and reliable model for preclinical research of ARDS syndrome | American Thoracic Society | DOI |
2020 | JC Ross, P Nardelli, J Onieva, SE Gerard, R Harmouche, Y Okajima, AA Diaz, G Washko et al. | An open-source framework for pulmonary fissure completeness assessment | Computerized Medical Imaging and Graphics: The Official Journal of the Computerized Medical Imaging Society | DOI |
2020 | W Shao, TJ Patton, SE Gerard, Y Pan, JM Reinhardt, OC Durumeric, JE Bayouth, and GE Christensen | N-phase local expansion ratio for characterizing out-of-phase lung ventilation | IEEE transactions on medical imaging | DOI |
2020 | J Herrmann, SE Gerard, W Shao, ML Hawley, JM Reinhardt, GE Christensen, EA Hoffman, and DW Kaczka | Quantifying regional lung deformation using four-dimensional computed tomography: A comparison of conventional and oscillatory ventilation | Frontiers in Physiology | DOI |
2020 | SE Gerard, J Herrmann, DW Kaczka, G Musch, A Fernandez-Bustamante, and JM Reinhardt | Multi-resolution convolutional neural networks for fully automated segmentation of acutely injured lungs in multiple species | Medical Image Analysis | DOI |
2020 | S Gerard, J Reinhardt, G Christensen, G Washko, and R San Jose Estepar | Clinical associations of direct estimation of local tissue expansion in smokers using deep learning | American Thoracic Society | DOI |
2020 | J Herrmann, S Gerard, W Shao, Y Xin, M Cereda, J Reinhardt, G Christensen, E Hoffman et al. | Expiratory de-aeration occurs faster in poorly- vs. normally-aerated regions of the injured lung | American Thoracic Society | DOI |
2020 | ZW Althof, SE Gerard, Y Pan, GE Christensen, EA Hoffman, and JM Reinhardt | Automatic quantification of pulmonary fissure integrity: A repeatability analysis | 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI) | DOI |
2020 | Y Pan, GE Christensen, OC Durumeric, SE Gerard, SP Bhatt, RG Barr, EA Hoffman, and JM Reinhardt | Assessment of lung biomechanics in COPD using image registration | 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI) | DOI |
2020 | SE Gerard, JM Reinhardt, GE Christensen, and RSJ Estepar | Estimating local tissue expansion in thoracic computed tomography images using convolutional neural networks | 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI) | DOI |
2019 | SE Gerard, TJ Patton, GE Christensen, JE Bayouth, and JM Reinhardt | FissureNet: A deep learning approach for pulmonary fissure detection in CT images | IEEE transactions on medical imaging | DOI |
2019 | J Kipritidis, BA Tahir, G Cazoulat, MS Hofman, S Siva, J Callahan, N Hardcastle, T Yamamoto et al. | The VAMPIRE challenge: A multi-institutional validation study of CT ventilation imaging | Medical Physics | DOI |
2019 | S Bodduluri, A Nakhmani, P Kandhare, T Patel, S Gerard, J Reinhardt, C Wilson, N Bhakta et al. | Prediction of emphysema and airway disease from spirometry using neural networks | American Thoracic Society | DOI |
2019 | J Herrmann, S Gerard, W Shao, J Reinhardt, G Christensen, E Hoffman, M Hawley, and D Kaczka | Multi-frequency oscillatory ventilation minimizes spatial gradients of regional strain using 4D CT image registration in porcine lung injury | American Thoracic Society | DOI |
2019 | SE Gerard, and JM Reinhardt | Pulmonary lobe segmentation using a sequence of convolutional neural networks for marginal learning | 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019) | DOI |
2019 | A Wuschner, E Wallat, M Flakus, S Gerard, T Patton, J Reinhardt, G Christensen, and J Bayouth | Vasculature anatomy change in nonsmall cell lung cancer patients post radiation therapy | Medical Physics | URL |
2019 | M Flakus, A Wuschner, E Wallat, W Shao, S Gerard, G Christensen, J Reinhardt, and J Bayouth | Improving the accuracy of 4DCT-based ventilation measurements using multiple phases | Medical Physics | DOI |
2019 | E Wallat, M Flakus, A Wuschner, W Shao, S Gerard, T Patton, G Christensen, J Reinhardt et al. | Radiation dose response model for ventilation change using all phases of 4DCT | Medical Physics | URL |
2019 | J Bayouth, E Wallat, A Wuschner, M Flakus, T Patton, W Shao, S Gerard, J Reinhardt et al. | Longitudinal changes in lung tissue elasticity following radiation therapy | Medical Physics | URL |
2018 | S Bodduluri, ASK Puliyakote, SE Gerard, JM Reinhardt, EA Hoffman, JD Newell, HP Nath, MK Han et al. | Airway fractal dimension predicts respiratory morbidity and mortality in COPD | The Journal of Clinical Investigation | DOI |
2018 | TJ Patton, SE Gerard, W Shao, GE Christensen, JM Reinhardt, and JE Bayouth | Quantifying ventilation change due to radiation therapy using 4DCT Jacobian calculations | Medical Physics | DOI |
2018 | SE Gerard, J Herrmann, DW Kaczka, and JM Reinhardt | Transfer learning for segmentation of injured lungs using coarse-to-fine convolutional neural networks | Image Analysis for Moving Organ, Breast, and Thoracic Images | DOI |
2018 | W Shao, TJ Patton, SE Gerard, Y Pan, JM Reinhardt, JE Bayouth, OC Durumeric, and GE Christensen | Detecting out-of-phase ventilation using 4DCT to improve radiation therapy for lung cancer | Image Analysis for Moving Organ, Breast, and Thoracic Images | DOI |
2018 | W Shao, SE Gerard, Y Pan, TJ Patton, JM Reinhardt, OC Durumeric, JE Bayouth, and GE Christensen | Sensitivity analysis of Jacobian determinant used in treatment planning for lung cancer | Medical Imaging 2018: Image Processing | DOI |
2018 | S Bodduluri, S Gerard, J Reinhardt, E Hoffman, J Newell, H Nath, M Dransfield, and S Bhatt | Silent zones of lung disease in active smokers | American Thoracic Society | URL |
2018 | J Bayouth, T Patton, S Gerard, W Shao, G Christensen, J Reinhardt, and A Baschnagel | Signal processing analysis of breathing rates show improved spectral coherence when human subjects receive musical melody and voice instruction guidance | Medical Physics | URL |
2018 | TJ Patton, SE Gerard, W Shao, GE Christensen, JM Reinhardt, AM Baschnagell, and JE Bayouth | Longitudinal assessment of 4DCT-derived ventilation change following radiation therapy | Medical Physics | URL |
2017 | T Patton, S Gerard, G Christensen, J Reinhardt, and J Bayouth | Removing interpolation artifacts in respiratory-gated 4DCT for improved ventilation estimation | Medical Physics | URL |
2017 | J Bayouth, T Patton, S Gerard, G Christensen, A Baschnagel, and J Reinhardt | Reducing patient respiration induced 4DCT image artifacts | Medical Physics | URL |
2017 | J Bayouth, T Patton, S Gerard, G Christensen, A Baschnagel, and J Reinhardt | Clinical application of a lung function planning technique designed to improve toxicity | Medical Physics | URL |
2017 | J Kipritidis, G Cazoulat, B Tahir, M Hofman, S Siva, J Callahan, T Yamamoto, G Christensen et al. | The VAMPIRE challenge: Results of an international multi-institutional validation study to evaluate CT ventilation imaging algorithms | Medical Physics | URL |
2016 | B Zhao, GE Christensen, JH Song, Y Pan, SE Gerard, JM Reinhardt, K Du, T Patton et al. | Tissue-volume preserving deformable image registration for 4DCT pulmonary images | 2016 IEEE Conference on Computer Vision and Pattern Recognition Workshops (CVPRW) | DOI |
2016 | Y Pan, GE Christensen, OC Durumeric, SE Gerard, JM Reinhardt, and GD Hugo | Current-and varifold-based registration of lung vessel and airway trees | 2016 IEEE Conference on Computer Vision and Pattern Recognition Workshops (CVPRW) | DOI |
2016 | SE Gerard, HJ Johnson, JE Bayouth, GE Christensen, K Du, J Guo, and JM Reinhardt | Alpha shapes for lung segmentation in the presence of large tumors | 6th International Workshop on Pulmonary Image Analysis | |
2015 | AM Nuotio-Antar, N Poungvarin, M Li, M Schupp, M Mohammad, S Gerard, F Zou, and L Chan | FABP4-Cre Mediated Expression of constitutively active ChREBP protects against obesity, fatty liver, and insulin resistance | Endocrinology | DOI |
2015 | K Du, T Patton, J Reinhardt, G Christensen, B Zhao, S Gerard, Y Pan, and J Bayouth | Lobar-level lung ventilation analysis using 4DCT and deformable image registration | Medical Physics | DOI |
2015 | SE Gerard, GE Christensen, JE Bayouth, S Bodduluri, Y Pan, J Guo, K Du, JH Song et al. | 4D lung CT segmentation for radiation therapy applications | ICART: Imaging and Computer Assistance in Radiation Therapy |